New journal paper "Implementation of an ontological reasoning to support the guideline-based management of primary breast cancer patients in the DESIREE project"

I have published a new journal paper:

journalif [j60] Bouaud J, Pelayo S, Lamy JB, Prébet C, Ngo C, Teixeira L, Guezennec G, Séroussi B. Implementation of an ontological reasoning to support the guideline-based management of primary breast cancer patients in the DESIREE project. Artificial Intelligence in Medicine 2020;108:101922

New preprint "A data science approach to drug safety"

I have published a new preprint:

preprint [p1] Lamy JB. A data science approach to drug safety: Semantic and visual mining of adverse drug events from clinical trials of pain treatments. Arxiv preprint arxiv:2006.16910 2020

New journal paper "Explainable decision support through the learning and visualization of preferences from a formal ontology of antibiotic treatments"

I have published a new journal paper:

journalif [j54] Lamy JB, Sedki K, Tsopra R. Explainable decision support through the learning and visualization of preferences from a formal ontology of antibiotic treatments. Journal of Biomedical Informatics 2020;104C:103407

New journal paper "Somatic mitochondrial mutations in oral cavity cancers among senegalese patients"

I have published a new journal paper:

journal [j50] Toure S, Mbaye F, Gueye MD, Fall M, Dem A, Lamy JB, Sembene M. Somatic mitochondrial mutations in oral cavity cancers among senegalese patients. Asian Pacific journal of cancer prevention (APJCP) 2019;20(7):2203-2208

New journal paper "AntibioGame®"

I have published a new journal paper:

journalif [j53] Tsopra R, Courtine M, Sedki K, Eap D, Cabal M, Cohen S, Bouchaud O, Mechaï F, Lamy JB. AntibioGame®: A serious game for teaching medical students about antibiotic use. International Journal of Medical Informatics 2020;136:104074

A presentation at ICABME 2019!

I presented my works on visual decision support for breast cancer therapy, at the ICABME 2019 congress in Tripoli.

My paper was entitled "Hierarchical visual case-based reasoning for supporting breast cancer therapy". It is available here and the presentation there.

New journal paper "Une plateforme multimodale d’aide à la décision"

I have published a new journal paper:

journal [j49] Séroussi B, Lamy JB, Prebet C, Ngo C, Teixeira L, Ugarriza A, Sekar B, Larburu N, Muro N, Guézennec G, Bouaud J. Une plateforme multimodale d’aide à la décision : Application à la prise en charge du cancer du sein dans le cadre du projet DESIREE. Technique et Science Informatiques (TSI) 2019;accepté

A presentation and an award at MEDINFO 2019!

I presented my works on the use of icons for browsing medical terminologies, in particular in pharmacovigilance, at MEDINFO 2019.

My paper was entitled "An iconic approach to the browsing of medical terminologies". It is available here and the presentation there.

And I obtained the Best paper award (first place)!

French book "Python et les ontologies"

My French book "Python et les ontologies" has been published by ENI editions.

This 310-pages book describes how to use OWL 2.0 ontologies in Python 3.x, with the Owlready2 Python module for ontology-oriented programming.

More informations (in French) on the editor website:

https://www.editions-eni.fr/livre/python-et-les-ontologies-9782409020223

I plan to translate the book in English in the coming year.

Two presentations at iV 2019!

I presented my works on rainbow boxes at the International Conference Information Visualisation (iV) 2019.

The first paper, entitled "Visual explanation of simple neural networks using interactive rainbow boxes", is available here and the presentation there.

The second paper, entitled "Proportional visualization of genotypes and phenotypes with rainbow boxes: methods and application to sickle cell disease" is available here and the presentation there. It is a joint work with a PhD and colleagues from Senegal and CERPAD.

New journal paper "RainBio"

I have published a new journal paper:

journalif [j51] Lamy JB, Tsopra R. RainBio: Proportional visualization of large sets in biology. IEEE Transactions on Visualization and Computer Graphics 2020;26(11):3285-3298

New journal paper "Visualizing undirected graphs and symmetric square matrices as overlapping sets"

New journal paper "Helping GPs to extrapolate guideline recommendations to patients for whom there are no explicit recommendations, through the visualization of drug properties"

I have published a new journal paper:

journalif [j47] Tsopra R, Sedki K, Courtine M, Falcoff H, De Béco A, Madar R, Mechaï F, Lamy JB. Helping GPs to extrapolate guideline recommendations to patients for whom there are no explicit recommendations, through the visualization of drug properties. The example of AntibioHelp® in bacterial diseases. Journal of the American Medical Informatics Association 2019;26(10):1010-1019

Presentation at VISAPP 2019!

I presented my works on the use of rainbow boxes for visualizing quantum algorithm at the International Conference on Information Visualization Theory and Applications (IVAPP) 2019.

The paper, entitled "Dynamic software visualization of quantum algorithms with rainbow boxes", is available here and the presentation there.